③加电荷:点击Edit>Charges>Compute Gasteiger>点“OK”。
④加Root:点击Ligand>Input>Choose…>选择Lig后点“Select Molecule for AutoDock 4”
点击Ligand>Torsion Tree>Detect Root…(ADT自动判定Ligand的Root)
点击Ligand>Torsion Tree>Show Root Expansion(显示Root扩展信息)
点击Ligand>Torsion Tree>Show/Hind Root Marker(显示/隐藏Root标记)
点击Ligand>Torsion Tree>Choose Torsions…>Done
点击Ligand>Output>Save as PDBQT…>保存